Links for Computational Genomics, Spring 2007

• NCBI - A public database of biological information and bioinformatics tools
• BioPerl - A set of modules that interact with various genomic databases
• CPAN - A huge collection of Perl Software and its Documentation
• ENSEMBL - European Genome browser for Eukaryotic Genomes and their annotation
• UCSC - UCSC Genome Browser For Eukaryotic Genomes, annotaion and Bioinformatics tools
• Gene Ontologies - Is a controlled vocabulary describing genes and gene products
• Pfam - Is a Database of protein families
• BIOCONDUCTOR - Software for analysis and comprehension of genomic data based on R programming Language
• Genome Sequencing Center - Large scale generation analysis of DNA sequence
• MEME - Discovers motifs in groups of related gene and protein sequences
• EMBL-EBI - A Public database of biological data maintained by European Molecular Biology Laboratory
• KEGG - Collection of Metabolic Networks
• Cytoscape - Bioinformatics software for for visualizing Molecular networks
• BioCarta - Database of metabolic pathways and tools to study the pathways
• Swiss-Prot - A protein sequence database and their annotation
• DAVID - Comprehensive set of functional annotation tools
• GSEA - Gene Set Enrichment Analysis

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