Lecture Materials for Computational Genomics, Spring 2007

• Lecture 1, Overview Sequence Analysis (Casavant)

  Suggested readings: Setubal; Ch 3,Bishop; Ch 7-9,Mount; Ch 7, Baxevanis; Ch 8

• Lecture 2, Managing Complexity (Advanced Perl) (Bair)

  Suggested readings: http://www.perl.com/pub/a/2000/10/begperl1.html

                                    http://www.cs.nott.ac.uk/~qiu/Teaching/SWTs/Perl-HandOut.html

• Lecture 3, Phylogenetics (Scheetz)

• Lecture 4, Systems Biology I (Bair)

• Lecture 5, Sequence Analysis II & Intro to HMMs (Casavant)

• Lecture 6, Gene Prediction and Finding (Casavant)

• Lecture 7, Semester Project Discussion

  Spring Break

• Lecture 8, Proteomics and Annotation (Bair)

  Kegg Perl Scripts:kegg.pl

                                 kegg_coverage.pl

• Lecture 9, Expression Data and Microarrays(Scheetz)

• Lecture 10, Microarray Analysis II (Including Alternative Splicing) (Scheetz)

• Lecture 11, Mapping, Linkage and Association Studies (Scheetz)

• Lecture 12, Systems Biology II - Gene and regulatory Networks (Bair)

• Lecture 13, Comparative Genomics (Casavant)

• Lecture 13, Semester Project Presentations

  
  

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